H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000390052 Accession number: BC130005 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Uncharacterized membrane protein C1orf95;
 
 

Transcript original information
Accession number BC130005.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:40132653
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (C1orf95) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (C1orf95);
Sequence data provider NA
Annotation project NA
Length of cDNA 566[bp] (No. of exon:3)[A:82 T:99 G:189 C:196]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type PCR rescued clones, C list
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Reverse orientation revised; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001644
Genomic location  G-integra Help Chromosome 1
Location 1q42.12
Position 226736533- 226789808
Strand +
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardC1orf95*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000049266
Predicted CDS 74..499;  141[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.765
Database links RefSeq NP_001003665
UniProt Q69YW2
CCDS CCDS31044

Motif information
ORF

length(141),orf(74:499)
MEPSHKDAETAAAAAAVAAADPRGASSSSGVVVQVREKKGPLRAAIPYMP
FPVAVICLFLNTFVPGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAA
LIQILTAIVMVGWIMSIFWGMDMVILAISQGYKEQGIPQQL*
a.a.
length
InterPro Name
length(141), motif(1:141) 141 IPR026673 SPEC3/C1orf95 [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000390052
H-Inv cluster ID Locus viewHIX0001644
Accession number BC130005.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Uncharacterized membrane protein C1orf95;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q69YW2)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence NA
PubMed ID 1671041417974005ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol C1orf95
HGNC aliases NA
HGNC name chromosome 1 open reading frame 95
DDBJ NA
UniProt C1orf95
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000049266
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardC1orf95*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT plasma membrane; 
Target P Not predicted
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
229 .. 229 C/A rs149419160 + CDS Synonymous[Pro52Pro]
263 .. 263 G/C rs201706496 + CDS Nonsynonymous[Val64Leu]
307 .. 307 C/T rs111228990 + CDS Synonymous[Cys78Cys]
325 .. 325 C/T rs146333541 + CDS Synonymous[Leu84Leu]
328 .. 328 G/A rs201231970 + CDS Synonymous[Pro85Pro]
347 .. 347 G/A rs139902713 + CDS Nonsynonymous[Val92Ile]
397 .. 397 C/T rs148475965 + CDS Synonymous[Ile108Ile]
506 .. 506 G/A rs553158 + 3'UTR
511 .. 511 C/A rs190988627 + 3'UTR
516 .. 516 G/C rs182763913 + 3'UTR
517 .. 517 G/T rs188971820 + 3'UTR
528 .. 528 G/A rs143970893 + 3'UTR
532 .. 532 G/A rs199904485 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
Location Variation Strand
102..122 (cgg)7 +
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer