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H-Invitational ID: HIT000393077 Accession number: DQ655964 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Non-protein-coding transcript, uncharacterized transcript.

		Select format Flat file XML file Nucleotide sequence fasta

Transcript original information Accession number DQ655964.2 CAGE tag ID NA EST ID NA Clone Number UGL15d02 Experimental resources   NBRC ; HGPD ; Antibody (CLDN12) ; Catalog (CLDN12); Sequence data provider NA Annotation project NA Length of cDNA 177[bp] (No. of exon:3)[A:58 T:45 G:51 C:23] Devision HTC Molecular type mRNA Library origin Cell type NA Tissue type NA Develpmental stage NA
Sequence quality information CDS feature NA Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature Truncation;  Notes NA	TTTCAGGGCTGTTGCTCCTGACAGATAAGTCAGTCTACCTGTTGTTGAAT GACATGCAGAAAAGAAATTTGGTAAGAAGAAAGTGATTTGACTTTGAAGA AAGATGACACCACCTTTGATGAGGGTAAATGGGAAGTTGGTAGCTCTGAA GGTGATCAGGCTGCAGGAAGAAGAAGA

Gene structure information

H-Inv cluster ID		HIX0006831
Genomic location	Chromosome	7
	Location	7q21.13
	Position	90193088- 90419940
	Strand	+
Possible duplicated location(s)		NA
Gene structure		3 exon(s)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	CLDN12;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Gene function information

H-Inv ID		HIT000393077
H-Inv cluster ID		HIX0006831
Accession number		DQ655964.2
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Non-protein-coding;
Definition		Non-protein-coding transcript, uncharacterized transcript.
Classification of non-protein-coding transcripts		Classification: Uncharacterized transcript
		Type: NA
		NA
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	CLDN12
	HGNC aliases	NA
	HGNC name	claudin 12
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	NA
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	CLDN12;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 11 .. 11 G/T rs184316199 + 95 .. 95 T/G rs192282583 + 113 .. 113 C/G rs17866277 +  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;