H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000428086 Accession number: AK309220 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Protransforming growth factor alpha isoform 2 preproprotein.
 
 

Transcript original information
Accession number AK309220.1
CAGE tag ID NA
EST ID NA
Clone Number BRTHA3009973
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 950[bp] (No. of exon:6)[A:179 T:212 G:280 C:279]
Devision HTC
Molecular type mRNA
Library origin Cell type NA
Tissue type thalamus
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) CAGCAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002140
Genomic location  G-integra Help Chromosome 2
Location 2p13.3
Position 70677788- 70780622
Strand -
Possible duplicated location(s) NA
Gene structure 6 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7039
KEGG GENES KEGG GENES(7039)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000195367
Predicted CDS 439..747;  102[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.815

Motif information
ORF

length(102),orf(439:747)
TCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSI
VALAVLIITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSET
VV*
a.a.
length
InterPro Name
length(102), motif(1:102) 102 IPR015497 Epidermal growth factor receptor ligand [Family]
length(25), motif(1:25) 25 IPR000742 Epidermal growth factor-like domain [Domain]
length(12), motif(13:24) 12 IPR013032 EGF-like, conserved site [Conserved_site]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000428086
H-Inv cluster ID Locus viewHIX0002140
Accession number AK309220.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Protransforming growth factor alpha isoform 2 preproprotein.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001093161)  [Identity/coverage = 99.315%/91.82%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000195367
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7039
KEGG GENES KEGG GENES(7039)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function protein binding (GO:0005515); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  extracellular;  mitochondria;  plasma membrane; 
Target P Other
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
23 .. 23 A/C rs11466190 + 5'UTR
330 .. 330 G/A rs10183171 - 5'UTR
342 .. 342 C/G rs200477881 - 5'UTR
347 .. 347 C/T rs138392270 - 5'UTR
365 .. 365 C/T rs199569305 - 5'UTR
366 .. 366 G/A rs150074771 - 5'UTR
370 .. 370 G/A rs147786817 - 5'UTR
377 .. 377 C/A rs199700477 - 5'UTR
411 .. 411 T/C rs147816445 - 5'UTR
496 .. 496 G/A rs148679837 - CDS Nonsynonymous[Val20Ile]
519 .. 519 G/A rs144680956 - CDS Synonymous[Ala27Ala]
540 .. 540 T/C rs140020331 - CDS Synonymous[Ala34Ala]
570 .. 570 C/G rs142836881 - CDS Synonymous[Ala44Ala]
582 .. 582 C/A rs141582665 - CDS Synonymous[Val48Val]
589 .. 589 G/A rs11466259 + CDS Nonsynonymous[Val51Met]
644 .. 644 G/A rs146962706 - CDS Nonsynonymous[Arg69Gln]
671 .. 671 T/A rs200451222 - CDS Nonsynonymous[Leu78His]
679 .. 679 C/T rs147241222 - CDS Nonsynonymous[Arg81Trp]
708 .. 708 G/A rs140828225 - CDS Synonymous[Lys90Lys]
723 .. 723 C/A rs199594512 - CDS AA-STOP[Cys95*]
744 .. 744 T/C rs2166975 - CDS Synonymous[Val102Val]
754 .. 754 C/T rs199990904 - 3'UTR
759 .. 759 G/A rs200314587 - 3'UTR
876 .. 876 G/A rs189105998 - 3'UTR
889 .. 889 G/T rs183977492 - 3'UTR
919 .. 919 T/C/G rs1058211 + 3'UTR
926 .. 926 G/A rs11466282 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer