H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
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H-Invitational ID:
HIT000428086
Accession number:
AK309220
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Protransforming growth factor alpha isoform 2 preproprotein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK309220.1
CAGE tag ID
NA
EST ID
NA
Clone Number
BRTHA3009973
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
950[bp] (No. of exon:6)[A:179 T:212 G:280 C:279]
Devision
HTC
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
thalamus
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
CAGCAG;
Transcript quality feature
NA
Notes
NA
AACACCTGGGAAGGGGAAGCGGAGTGTGAACGGGCTTGAACTTTAATCCG CCGCAGCTGTGTGTCTGCTCAGACACATGCCTACACCTACCTGCTTACCT GGCTGCCTCCAAGCCCGGCTCAGCCGGCGTCGCTGGCGTGTAGACTGGGC CGCCTCGGAACGGGGGCCGGCGTCTAACCCTCTGGCCGGGTCTTGCCTGC GCCCCTTTGGCACCCCCTGCCCACCTCTAAGCCCCAGCGACGAGCAGAGA TGTTCAAGATCGGCAGAGGCGCCCTCGATCTCTTTTCAGAGCTCTTGAGC TTTGGGGGTATTGTGTTGGCTGCGTGCCAGGCCTTGGAGAACAGCACGTC CCCGCTGAGTGACCCGCCCGTGGCTGCAGCAGTGGTGTCCCATTTTAATG ACTGCCCAGATTCCCACACTCAGTTCTGCTTCCATTGAACCTGCAGGTTT TTGGTGCAGGAGGACAAGCCAGCATGTGTCTGCCATTCTGGGTACGTTGG TGCACGCTGTGAGCATGCGGACCTCCTGGCCGTGGTGGCTGCCAGCCAGA AGAAGCAGGCCATCACCGCCTTGGTGGTGGTCTCCATCGTGGCCCTGGCT GTCCTTATCATCACATGTGTGCTGATACACTGCTGCCAGGTCCGAAAACA CTGTGAGTGGTGCCGGGCCCTCATCTGCCGGCACGAGAAGCCCAGCGCCC TCCTGAAGGGAAGAACCGCTTGCTGCCACTCAGAAACAGTGGTTTGAAGA GCCCAGAGGAGGAGTTTGGCCAGGTGGACTGTGGCAGATCAATAAAGAAA GGCTTCTTCAGGACAGCACTGCCAGAGATGCCTGGGTGTGCCACAGACCT TCCTACTTGGCCTGTAATCACCTGTGCAGCCTTTTGTGGGCCTTCAAAAC TCTGTCAAGAACTCCGTCTGCTTGGGGTTATTCAGTGTGACCTAGAGAAG
Gene structure information
H-Inv cluster ID
HIX0002140
Genomic location
Chromosome
2
Location
2p13.3
Position
70677788- 70780622
Strand
-
Possible duplicated location(s)
NA
Gene structure
6 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:7039
;
KEGG GENES
KEGG GENES(7039)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000195367
Predicted CDS
439..747; 102[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.815
TCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSI VALAVLIITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSET VV*
Motif information
a.a.
length
InterPro
Name
102
IPR015497
Epidermal growth factor receptor ligand [Family]
25
IPR000742
Epidermal growth factor-like domain [Domain]
12
IPR013032
EGF-like, conserved site [Conserved_site]
Gene function information
H-Inv ID
HIT000428086
H-Inv cluster ID
HIX0002140
Accession number
AK309220.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Protransforming growth factor alpha isoform 2 preproprotein.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_001093161
) [Identity/coverage = 99.315%/91.82%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000195367
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:7039
;
KEGG GENES
KEGG GENES(7039)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
protein binding (
GO:0005515
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
cytosol; extracellular; mitochondria; plasma membrane;
Target P
Other
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
23 .. 23
A/C
rs11466190
+
5'UTR
330 .. 330
G/A
rs10183171
-
5'UTR
342 .. 342
C/G
rs200477881
-
5'UTR
347 .. 347
C/T
rs138392270
-
5'UTR
365 .. 365
C/T
rs199569305
-
5'UTR
366 .. 366
G/A
rs150074771
-
5'UTR
370 .. 370
G/A
rs147786817
-
5'UTR
377 .. 377
C/A
rs199700477
-
5'UTR
411 .. 411
T/C
rs147816445
-
5'UTR
496 .. 496
G/A
rs148679837
-
CDS
Nonsynonymous[Val20Ile]
519 .. 519
G/A
rs144680956
-
CDS
Synonymous[Ala27Ala]
540 .. 540
T/C
rs140020331
-
CDS
Synonymous[Ala34Ala]
570 .. 570
C/G
rs142836881
-
CDS
Synonymous[Ala44Ala]
582 .. 582
C/A
rs141582665
-
CDS
Synonymous[Val48Val]
589 .. 589
G/A
rs11466259
+
CDS
Nonsynonymous[Val51Met]
644 .. 644
G/A
rs146962706
-
CDS
Nonsynonymous[Arg69Gln]
671 .. 671
T/A
rs200451222
-
CDS
Nonsynonymous[Leu78His]
679 .. 679
C/T
rs147241222
-
CDS
Nonsynonymous[Arg81Trp]
708 .. 708
G/A
rs140828225
-
CDS
Synonymous[Lys90Lys]
723 .. 723
C/A
rs199594512
-
CDS
AA-STOP[Cys95*]
744 .. 744
T/C
rs2166975
-
CDS
Synonymous[Val102Val]
754 .. 754
C/T
rs199990904
-
3'UTR
759 .. 759
G/A
rs200314587
-
3'UTR
876 .. 876
G/A
rs189105998
-
3'UTR
889 .. 889
G/T
rs183977492
-
3'UTR
919 .. 919
T/C/G
rs1058211
+
3'UTR
926 .. 926
G/A
rs11466282
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;