H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000429310 Accession number: AK310444 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to S-phase kinase-associated protein 1 isoform a.
 
 

Transcript original information
Accession number AK310444.1
CAGE tag ID NA
EST ID NA
Clone Number TESTI4024760
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1270[bp] (No. of exon:1)[A:396 T:320 G:294 C:260]
Devision HTC
Molecular type mRNA
Library origin Cell type NA
Tissue type testis
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0129723
Genomic location  G-integra Help Chromosome 12
Location 12p12.3
Position 17141681- 17142951
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:728622
KEGG GENES KEGG GENES(728622)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000196496
Predicted CDS 269..898;  209[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.711

Motif information
ORF

length(209),orf(269:898)
MLCRATVVASSSAFLFLRCRLPTLVSLRPAVSLTQNTMPSIKLQSSGGEI
FEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT
HHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK
GLLDVTCKTVANMVNRKTPEEIHKTFNLKNDFTGPGAVAHVCNPSTLGGR
GRRITRSVD*
a.a.
length
InterPro Name
length(166), motif(20:185) 166 IPR001232 S-phase kinase-associated protein 1-like [Family]
length(146), motif(38:183) 146 IPR011333 BTB/POZ fold [Domain]
length(112), motif(38:149) 112 IPR001232 S-phase kinase-associated protein 1-like [Family]
length(65), motif(39:103) 65 IPR016073 SKP1 component, POZ domain [Domain]
length(68), motif(40:107) 68 IPR011333 BTB/POZ fold [Domain]
length(65), motif(119:183) 65 IPR016072 SKP1 component, dimerisation [Domain]
length(61), motif(123:183) 61 IPR016072 SKP1 component, dimerisation [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000429310
H-Inv cluster ID Locus viewHIX0129723
Accession number AK310444.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Similar to S-phase kinase-associated protein 1 isoform a.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_008861)  [Identity/coverage = 86.184%/95.0%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID HIF0001245
Gene family/group name SKP1 component (IPR001232).
Evidence motif (InterPro) ID 2
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number EC 3.1.1.3triacylglycerol lipase; 
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway 00561 :Glycerolipid metabolism; 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000196496
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:728622
KEGG GENES KEGG GENES(728622)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links SKP1 component (IPR001232). Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Biological process ubiquitin-dependent protein catabolic process (GO:0006511); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT mitochondria;  cytosol;  extracellular; 
Target P mitochondria
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
39 105 1fqvB2 3e-21 95.1 61/100 d.42.1.1
122 183 1fqvB1 2e-29 91.9 62/76 a.157.1.1
Related H-InvDB links GTOP GTOP

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Takifugu sp. (Fugu) SINFRUT00000156654 G-integraG-integra
Orthology Macaca sp. (Macaque) XR_011169 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
119 .. 119 G/C rs76062939 + 5'UTR
154 .. 154 G/A rs74574225 + 5'UTR
181 .. 181 A/T rs191206370 + 5'UTR
281 .. 281 G/A rs117054805 + CDS Nonsynonymous[Ala5Thr]
364 .. 364 C/G rs11538040 + CDS Synonymous[Ser32Ser]
370 .. 370 A/G rs11538033 + CDS Synonymous[Thr34Thr]
384 .. 384 C/A rs11538037 + CDS Nonsynonymous[Pro39His]
386 .. 386 T/A rs182527931 + CDS Nonsynonymous[Ser40Thr]
408 .. 408 G/A rs11538036 + CDS Nonsynonymous[Gly47Asp]
412 .. 412 A/G rs11538035 + CDS Synonymous[Gly48Gly]
433 .. 433 G/A rs187710340 + CDS Synonymous[Val55Val]
708 .. 708 T/C rs139688191 + CDS Nonsynonymous[Leu147Ser]
840 .. 840 T/C rs35949588 + CDS Nonsynonymous[Val191Ala]
866 .. 866 C/T rs7955087 + CDS AA-STOP[Arg200*]
876 .. 876 G/A rs190111718 + CDS Nonsynonymous[Arg203Gln]
1013 .. 1013 G/A rs10744139 + 3'UTR
1107 .. 1107 T/A rs146040883 + 3'UTR
1127 .. 1127 A/C rs12581954 + 3'UTR
1219 .. 1219 G/A rs182431718 + 3'UTR
1266 .. 1266 A/T rs842474 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L2 57 192 -
AluY 819 1124 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer