H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000429924 Accession number: AK311058 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to UBX domain-containing protein 4.
 
 

Transcript original information
Accession number AK311058.1
CAGE tag ID NA
EST ID NA
Clone Number UTERU3013699
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (UBXN4) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (UBXN4);
Sequence data provider NA
Annotation project NA
Length of cDNA 961[bp] (No. of exon:3)[A:269 T:239 G:261 C:192]
Devision HTC
Molecular type mRNA
Library origin Cell type NA
Tissue type uterus
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002478
Genomic location  G-integra Help Chromosome 2
Location 2q21.3
Position 136499196- 136511580
Strand +
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:23190
KEGG GENES KEGG GENES(23190)
GeneCard GeneCardUBXN4*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000077165
Predicted CDS 305..592;  95[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.705

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000429924
H-Inv cluster ID Locus viewHIX0002478
Accession number AK311058.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to UBX domain-containing protein 4.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_055422)  [Identity/coverage = 89.024%/16.34%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol UBXN4
HGNC aliases "UBX domain-containing 2", "UBX domain containing 2"
HGNC name UBX domain protein 4
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000077165
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:23190
KEGG GENES KEGG GENES(23190)
GeneCard GeneCardUBXN4*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI membrane protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
20 .. 20 C/T rs59032835 + 5'UTR
41 .. 41 C/G rs116350292 + 5'UTR
217 .. 217 C/T rs182369370 + 5'UTR
220 .. 220 A/C rs111285988 + 5'UTR
247 .. 247 C/T rs3769014 - 5'UTR
263 .. 263 G/A rs111798914 + 5'UTR
312 .. 312 G/C rs11554001 - CDS Nonsynonymous[Trp3Ser]
405 .. 405 C/G rs181244197 + CDS Nonsynonymous[Thr34Arg]
479 .. 479 G/A rs185396013 + CDS Nonsynonymous[Asp59Asn]
567 ^ 568 -/C rs34085718 + CDS
618 .. 618 T/G rs181054124 + 3'UTR
651 .. 651 A/G rs187054739 + 3'UTR
673 .. 673 T/A rs74265493 + 3'UTR
806 .. 806 A/- rs3841562 + 3'UTR
881 .. 881 T/C rs144915789 + 3'UTR
943 .. 943 G/T rs191443905 + 3'UTR
956 .. 956 G/A rs3213889 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L1MC5 675 730 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer