H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
Pathway ID
Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000429924
Accession number:
AK311058
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to UBX domain-containing protein 4.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK311058.1
CAGE tag ID
NA
EST ID
NA
Clone Number
UTERU3013699
Experimental resources
NBRC
;
HGPD
;
Antibody (UBXN4)
;
Catalog (UBXN4)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
961[bp] (No. of exon:3)[A:269 T:239 G:261 C:192]
Devision
HTC
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
uterus
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
Truncation;
Notes
NA
ACTTCCTGGACTGCGCGACCGGAGGCCTAGCGGGCGCGCGCCCGCACCAT CGACTCGCCAACGAGAGAAGGTCCTGGGGCACGGACACCGACGGGTTGCG ACTGTGACGTGAGGTGTTCTCGCGCGCGCTAGCGCGCGTCTCCGGGTGCC GCTGACGGGCGTGCGCGCTTGTGCGGAGCCGGAGGTGGGGGCCGAACCAG CCAAGGTTGCGGGGGCCGCAGAGCCGGACGAAGACGGAGGGCGGAGCCGG CTTCGGGACTGCGGAGACTACACACCGAGCGAGCGCCTGGGCCCGAAGGG AGCGATGCTGTGGTTCCAGGGCGCCATTCCGGCCGCCATCGCGACGGCCA AAAGGAGCGGCGCGGTCTTCGTGGTGTTCGTGGCAGGTGATGATGAACAG TCTACACAGATGGCTGCAAGTTGGGAAGATGATAAAGTTACAGAAGCATC TTCAAACAGTTTTGTTGCTATTAAAATCGATACCAAAAGTGAAGCCTGCC TACAGTTTTCACAAATCTGTATCCTTTCAGTAAAGAATGGCTTATATATA TACATTTATTTACCTTCCTTTTGGTTAATTTATGAAATTTAGAAATTATT CATTTTTATTTAGGAAATCATACATTCTTTTTTATGGAAACTTTATTACT AAGTGTCCTCATTTAAAAAAAATGTTATTATAGGAAATTTCAAACATATA TAAAAGTAACTCAATGGTGTAGTGCACCCCATACATTGAGATAATATATT GCAGCTAAAGATAGGATAGGGAGTTTTTAAAATGTGAATATCTGAAAAAC AATATAGATCAGTTGGGTTGGAATGTTACAAGTAGCTTGCAAGAGGCAGC TGGCAGCAAGATGGATAGAAAAGGAAGTTATGATAGAGGAGAATGTAGTA GATTCTTCACTAGAATATACCTCATAAATTAACATGTCACATGTATTAAT ACTACGGGTAT
Gene structure information
H-Inv cluster ID
HIX0002478
Genomic location
Chromosome
2
Location
2q21.3
Position
136499196- 136511580
Strand
+
Possible duplicated location(s)
NA
Gene structure
3 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:23190
;
KEGG GENES
KEGG GENES(23190)
;
GeneCard
UBXN4
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000077165
Predicted CDS
305..592; 95[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.705
MLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASS NSFVAIKIDTKSEACLQFSQICILSVKNGLYIYIYLPSFWLIYEI*
Gene function information
H-Inv ID
HIT000429924
H-Inv cluster ID
HIX0002478
Accession number
AK311058.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to UBX domain-containing protein 4.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_055422
) [Identity/coverage = 89.024%/16.34%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
UBXN4
HGNC aliases
"UBX domain-containing 2", "UBX domain containing 2"
HGNC name
UBX domain protein 4
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000077165
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:23190
;
KEGG GENES
KEGG GENES(23190)
;
GeneCard
UBXN4
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; nuclear; Other;
Target P
Not predicted
SOSUI
membrane protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
20 .. 20
C/T
rs59032835
+
5'UTR
41 .. 41
C/G
rs116350292
+
5'UTR
217 .. 217
C/T
rs182369370
+
5'UTR
220 .. 220
A/C
rs111285988
+
5'UTR
247 .. 247
C/T
rs3769014
-
5'UTR
263 .. 263
G/A
rs111798914
+
5'UTR
312 .. 312
G/C
rs11554001
-
CDS
Nonsynonymous[Trp3Ser]
405 .. 405
C/G
rs181244197
+
CDS
Nonsynonymous[Thr34Arg]
479 .. 479
G/A
rs185396013
+
CDS
Nonsynonymous[Asp59Asn]
567 ^ 568
-/C
rs34085718
+
CDS
618 .. 618
T/G
rs181054124
+
3'UTR
651 .. 651
A/G
rs187054739
+
3'UTR
673 .. 673
T/A
rs74265493
+
3'UTR
806 .. 806
A/-
rs3841562
+
3'UTR
881 .. 881
T/C
rs144915789
+
3'UTR
943 .. 943
G/T
rs191443905
+
3'UTR
956 .. 956
G/A
rs3213889
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
L1MC5
675
730
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;