H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000432999 Accession number: AK314133 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK314133.1
CAGE tag ID NA
EST ID NA
Clone Number BRTHA2036586
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (C2orf15) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (C2orf15);
Sequence data provider NA
Annotation project NA
Length of cDNA 886[bp] (No. of exon:4)[A:235 T:229 G:202 C:220]
Devision HTC
Molecular type mRNA
Library origin Cell type NA
Tissue type thalamus
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0200320
Genomic location  G-integra Help Chromosome 2
Location 2q11.2
Position 99758076- 99767297
Strand +
Possible duplicated location(s) NA
Gene structure 4 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:150590
KEGG GENES KEGG GENES(150590)
GeneCard GeneCardC2orf15*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000198541
Predicted CDS 509..886;  125[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.653

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000432999
H-Inv cluster ID Locus viewHIX0200320
Accession number AK314133.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol C2orf15
HGNC aliases NA
HGNC name chromosome 2 open reading frame 15
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000198541
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:150590
KEGG GENES KEGG GENES(150590)
GeneCard GeneCardC2orf15*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear;  extracellular; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
21 .. 21 C/T rs116785938 + 5'UTR
113 .. 113 C/-/T rs34650851 + 5'UTR
204 .. 204 A/C rs35131866 + 5'UTR
228 .. 228 C/G rs2964975 + 5'UTR
309 .. 309 C/G rs112843827 + 5'UTR
337 .. 337 A/G rs183711975 + 5'UTR
359 .. 359 C/A rs140302633 + 5'UTR
566 .. 566 A/- rs35196622 + CDS
570 .. 570 A/G rs138536655 + CDS Nonsynonymous[Lys21Arg]
595 .. 595 T/G rs146451233 + CDS Nonsynonymous[Ile29Met]
614 .. 614 G/A rs146177676 + CDS Nonsynonymous[Gly36Arg]
660 .. 660 T/C rs200922353 + CDS Nonsynonymous[Met51Thr]
662 .. 662 G/A rs139891421 + CDS Nonsynonymous[Asp52Asn]
720 .. 720 C/T rs199883828 + CDS Nonsynonymous[Ala71Val]
766 .. 766 A/C rs190179360 + CDS Synonymous[Thr86Thr]
869 .. 869 A/T rs148759504 + CDS Nonsynonymous[Met121Leu]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer