H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
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Chromosome number
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Definition*
Data source ID
---
CCDS ID
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FR Accession number
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HGNC gene name*
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H-Invitational ID:
HIT000433334
Accession number:
AK314468
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK314468.1
CAGE tag ID
NA
EST ID
NA
Clone Number
TRACH3009710
Experimental resources
NBRC
;
HGPD
;
Antibody (ACBD3)
;
Catalog (ACBD3)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1635[bp] (No. of exon:8)[A:475 T:307 G:488 C:365]
Devision
HTC
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
trachea
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
CAGGAG;
Transcript quality feature
NA
Notes
NA
GATACGTGGCTGCCGTCTGTCCCCGCTGAGGAGGTGCAGCAGCCGGAGAT GGCGGCGGTGCTGAACGCAGAGCGACTCGAGGTGTCCGTCGACGGCCTCA CGCTCAGCCCGGACCCGGAGGAGCGGCCTGGGGCGGAGGGCGCCCCGCTG CTGCCGCCACCGCTGCCACCGCCCTCGCCACCTGGATCCGGTCGCGGCCC GGGCGCCTCAGGGGAGCAGCCCGAGCCCGGGGAGGCGGCGGCTGGGGGCG CGGCGGAGGAGGCGCGGCGGCTGGAGCAGCGCTGGGGTTTCGGCCTGGAG GAGTTGTACGGCCTGGCACTGCGCTTCTTCAAAGAAAAAGATGGCAAAGC ATTTCATCCAACTTATGAAGAAAAATTGAAGCTTGTGGCACTGCATAAGC AAGTTCTTATGGGCCCATATAATCCAGACACTTGTCCTGAGGTTGGATTC TTTGATGTGTTGGGGAATGACAGGAGGAGAGAATGGGCAGCCCTGGGAAA CATGTCTAAAGAGGATGCCATGGTGGAGTTTGTCAAGCTCTTAAATAGGT GTTGCCATCTCTTTTCAACATATGTTGCGTCCCACAAAATAGAGAAGGAA GAGCAAGAAAAAAAAAGGAAGGAGGAAGAGGAGCGAAGGCGGCGTGAAGA GGAAGAAAGAGAACGTCTGCAAAAGGAGGAAGAGAAACGTAGGAGAGAAG AAGAGGAAAGGCTTCGACGGGAGGAAGAGGAAAGGAGACGGATAGAAGAA GAAAGGCTTCGGTTGGAGCAGCAAAAGCAGCAGATAATGGCAGCTTTAAA CTCCCAGACTGCCGTGCAGTTCCAGCAGTATGCAGCCCAACAGTATCCAG GGAACTACGAACAGCAGCAAATTCTCATCCGCCAGTTGCAGGAGCAACAC TATCAGCAGTACATGCAGCAGTTGTATCAAGTCCAGCTTGCACAGCAACA GGCAGCATTACAGAAACAACAGGAAGTAGTAGTGGCTGGGTCTTCCTTGC CTACATCATCAAAAGTGAATGCAACTGTACCAAGTAATATGATGTCAGTT AATGGACAGGCCAAAACACACACTGACAGCTCCGAAAAAGAACTGGAACC AGAAGCTGCAGAAGAAGCCCTGGAGAATGGACCAAAAGAATCTCTTCCAG TAATAGCAGCTCCATCCATGTGGACACGACCTCAGATCAAAGACTTCAAA GAGAAGATTCAGCAGGATGCAGATTCCGTGATTACAGTGGGCCGAGGAGA AGTGGTCACTGTTCGAGTACCCACCCATGAAGAAGGATCATATCTCTTTT GGGAATTTGCCACAGACAATTATGACATTGGGTTTGGGGTGTATTTTGAA TGGACAGACTCTCCAAACACTGCTGTCAGCGTGCATGTCAGTGAGTCCAG CGATGACGACGAGGAGGAAGAAGAAAACATCGGTTGTGAAGAGAAAGCCA AAAAGAATGCCAACAAGCCTTTGCTGGATGAGATTGTGCCTGTGTACCGA CGGGACTGTCATGAGGAGGTGTATGCTGGCAGCCATCAATATCCAGGGAG AGGAGTCTATCTCCTCAAGTTTGACAACTCCTACTCTTTGTGGCGGTCAA AATCAGTCTACTACAGAGTCTATTATACTAGATAA
Gene structure information
H-Inv cluster ID
HIX0001643
Genomic location
Chromosome
1
Location
1q42.12
Position
226334311- 226374424
Strand
-
Possible duplicated location(s)
NA
Gene structure
8 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:64746
;
KEGG GENES
KEGG GENES(64746)
;
GeneCard
ACBD3
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000024076
Predicted CDS
49..1635; 528[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.743
Database links
RefSeq
NP_073572
;
UniProt
Q9H3P7
;
CCDS
CCDS1551
;
MAAVLNAERLEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPSPPGSGRG PGASGEQPEPGEAAAGGAAEEARRLEQRWGFGLEELYGLALRFFKEKDGK AFHPTYEEKLKLVALHKQVLMGPYNPDTCPEVGFFDVLGNDRRREWAALG NMSKEDAMVEFVKLLNRCCHLFSTYVASHKIEKEEQEKKRKEEEERRRRE EEERERLQKEEEKRRREEEERLRREEEERRRIEEERLRLEQQKQQIMAAL NSQTAVQFQQYAAQQYPGNYEQQQILIRQLQEQHYQQYMQQLYQVQLAQQ QAALQKQQEVVVAGSSLPTSSKVNATVPSNMMSVNGQAKTHTDSSEKELE PEAAEEALENGPKESLPVIAAPSMWTRPQIKDFKEKIQQDADSVITVGRG EVVTVRVPTHEEGSYLFWEFATDNYDIGFGVYFEWTDSPNTAVSVHVSES SDDDEEEEENIGCEEKAKKNANKPLLDEIVPVYRRDCHEEVYAGSHQYPG RGVYLLKFDNSYSLWRSKSVYYRVYYTR*
Motif information
a.a.
length
InterPro
Name
92
IPR014352
FERM/acyl-CoA-binding protein, 3-helical bundle [Domain]
88
IPR000582
Acyl-CoA-binding protein, ACBP [Domain]
92
IPR000582
Acyl-CoA-binding protein, ACBP [Domain]
88
IPR000582
Acyl-CoA-binding protein, ACBP [Domain]
19
IPR022408
Acyl-CoA-binding protein, ACBP, conserved site [Conserved_site]
143
IPR009038
GOLD [Domain]
55
IPR009038
GOLD [Domain]
131
IPR009038
GOLD [Domain]
53
IPR009038
GOLD [Domain]
Gene function information
H-Inv ID
HIT000433334
H-Inv cluster ID
HIX0001643
Accession number
AK314468.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9H3P7
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
11590181
;
12665801
;
14702039
;
15489334
;
16710414
;
18691976
;
19690332
;
20068231
;
21269460
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
ACBD3
HGNC aliases
"golgi complex associated protein 1, 60kDa", "acyl-Coenzyme A binding domain containing 3"
HGNC name
acyl-CoA binding domain containing 3
DDBJ
NA
UniProt
ACBD3
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000024076
No. of interaction
25
Interaction partner(s)
HIP000021834
;
HIP000023033
;
HIP000025295
;
HIP000028585
;
HIP000028785
;
HIP000028936
;
HIP000029584
;
HIP000047440
;
HIP000049733
;
HIP000054007
;
HIP000055792
;
HIP000057104
;
HIP000060896
;
HIP000066454
;
HIP000066511
;
HIP000072624
;
HIP000072624
;
HIP000077623
;
HIP000088671
;
HIP000091231
;
HIP000091335
;
HIP000091335
;
HIP000095713
;
HIP000097882
;
HIP000103500
;
BIND
150193;
DIP
NA
MINT
MINT-61799;
HPRD
03933; 03990; 06901;
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:64746
;
KEGG GENES
KEGG GENES(64746)
;
GeneCard
ACBD3
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
acyl-CoA binding (
GO:0000062
);
Biological process
transport (
GO:0006810
);
Cellular component
integral to membrane (
GO:0016021
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear; cytosol;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
83
172
1hbkA
5e-14
17.4
86/89
a.11.1.1
Related H-InvDB links
GTOP
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
18 .. 18
T/A
rs151203444
-
5'UTR
23 .. 23
C/A
rs185630727
-
5'UTR
36 .. 36
G/A
rs200337750
-
5'UTR
69 .. 69
A/T
rs77797743
-
CDS
Synonymous[Ala7Ala]
508 .. 508
A/G
rs143911859
-
CDS
Nonsynonymous[Lys154Glu]
600 .. 600
A/G
rs149088607
-
CDS
Synonymous[Glu184Glu]
608 ^ 609
-/C
rs111701159
-
CDS
609 .. 609
A/C
rs2306120
-
CDS
Nonsynonymous[Glu187Asp]
627 .. 627
A/T
rs9730340
-
CDS
Nonsynonymous[Glu193Asp]
688 .. 688
C/T/G
rs112143123
-
CDS
689 .. 689
G/A
rs147538215
-
CDS
Nonsynonymous[Arg214His]
711 .. 711
G/C
rs191893895
-
CDS
Nonsynonymous[Arg221Ser]
733 .. 733
A/C
rs78919255
-
CDS
Synonymous[Arg229Arg]
734 .. 734
G/C
rs77727776
-
CDS
Nonsynonymous[Arg229Thr]
740 .. 740
G/A
rs145831627
-
CDS
Nonsynonymous[Arg231Gln]
756 .. 756
G/C
rs149848847
-
CDS
Nonsynonymous[Arg236Ser]
814 .. 814
G/A
rs200702189
-
CDS
Nonsynonymous[Val256Met]
837 .. 837
C/T
rs149492799
-
CDS
Synonymous[Ala263Ala]
921 .. 921
G/A
rs180969293
-
CDS
Synonymous[Gln291Gln]
945 .. 945
G/A
rs141482742
-
CDS
Synonymous[Gln299Gln]
974 .. 974
A/G
rs137989799
-
CDS
Nonsynonymous[Glu309Gly]
991 .. 991
T/G
rs199935319
-
CDS
Nonsynonymous[Ser315Ala]
1024 .. 1024
A/C
rs186444053
-
CDS
Nonsynonymous[Thr326Pro]
1040 .. 1040
T/C
rs141535126
-
CDS
Nonsynonymous[Met331Thr]
1112 .. 1112
A/G
rs144925748
-
CDS
Nonsynonymous[Glu355Gly]
1115 .. 1115
A/C
rs143544007
-
CDS
Nonsynonymous[Glu356Ala]
1132 .. 1132
C/T
rs199621655
-
CDS
Nonsynonymous[Pro362Ser]
1136 .. 1136
A/G
rs189746293
-
CDS
Nonsynonymous[Lys363Arg]
1221 .. 1221
A/T
rs201230026
-
CDS
Synonymous[Ala391Ala]
1225 .. 1225
T/G
rs148868431
-
CDS
Nonsynonymous[Ser393Ala]
1227 .. 1227
C/T
rs114674626
-
CDS
Synonymous[Ser393Ser]
1278 .. 1278
T/C
rs200054927
-
CDS
Synonymous[His410His]
1293 .. 1293
T/C
rs147875428
-
CDS
Synonymous[Tyr415Tyr]
1319 .. 1319
A/G
rs150683627
-
CDS
Nonsynonymous[Asn424Ser]
1326 .. 1326
C/T
rs149458367
-
CDS
Synonymous[Asp426Asp]
1336 .. 1336
G/A
rs142934805
-
CDS
Nonsynonymous[Gly430Arg]
1338 .. 1338
G/A
rs201959552
-
CDS
Synonymous[Gly430Gly]
1413 .. 1413
G/C
rs201638495
-
CDS
Nonsynonymous[Glu455Asp]
1431 .. 1431
C/T
rs146216214
-
CDS
Synonymous[Ile461Ile]
1466 .. 1466
A/G
rs17855715
-
CDS
Nonsynonymous[Lys473Arg]
1518 .. 1518
G/T
rs3211100
+
CDS
Nonsynonymous[Glu490Asp]
1579 .. 1579
T/C
rs113333885
-
CDS
Nonsynonymous[Ser511Pro]
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;