H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000563781_01 Accession number: AB560771 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Protein PBMUCL2; HLA complex group 22; Panbronchiolitis-related mucin-like protein 2; Precursor;
 
 

Transcript original information
Accession number AB560771.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (HCG22) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (HCG22);
Sequence data provider NA
Annotation project NA
Length of cDNA 1671[bp] (No. of exon:4)[A:453 T:343 G:402 C:473]
Devision NA
Molecular type NA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1658(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) TAGTAG; 
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0207400
Genomic location  G-integra Help Chromosome 6
Location 6p21.33
Position 31021227- 31027654
Strand +
Possible duplicated location(s) HIX0165913;  HIX0166084;  HIX0166350;  HIX0166804;  HIX0167048;  HIX0167336;  HIX0167592; 
Gene structure 4 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:285834
KEGG GENES KEGG GENES(285834)
GeneCard GeneCardHCG22*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000381820
Predicted CDS 313..1068;  251[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.784
Database links RefSeq NA
UniProt E2RYF7
CCDS NA

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000563781_01
H-Inv cluster ID Locus viewHIX0207400
Accession number AB560771.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Protein PBMUCL2; HLA complex group 22; Panbronchiolitis-related mucin-like protein 2; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (E2RYF7)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 1457440420981447ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol HCG22
HGNC aliases "HLA complex group 22 (non-protein coding)"
HGNC name HLA complex group 22
DDBJ PBMUCL2
UniProt HCG22
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000381820
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:285834
KEGG GENES KEGG GENES(285834)
GeneCard GeneCardHCG22*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  mitochondria;  peroxisome; 
Target P signal peptide
SOSUI soluble protein
TMHMM soluble protein
PTS1
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Bos sp. (Cow) XM_869097 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
40 .. 40 G/T rs113489016 + 5'UTR
48 ^ 49 -/G rs9281119 + 5'UTR
121 .. 121 G/A rs17190141 + 5'UTR
163 .. 163 C/T rs117264051 + 5'UTR
202 ^ 203 -/AAAAAAACCCCC rs147109000 + 5'UTR
306 .. 306 G/A rs147569343 + 5'UTR
319 .. 319 C/G rs3873352 - CDS Nonsynonymous[Arg3Gly]
364 .. 364 G/C rs2523855 - CDS Nonsynonymous[Glu18Gln]
375 .. 375 A/G rs11756181 + CDS Synonymous[Gly21Gly]
401 .. 401 C/T rs9262616 + CDS Nonsynonymous[Ala30Val]
402 .. 402 A/G rs141943201 + CDS Synonymous[Ala30Ala]
412 .. 412 G/A rs9262617 + CDS Nonsynonymous[Gly34Arg]
426 .. 426 T/C rs17196514 + CDS Synonymous[Asp38Asp]
434 .. 434 G/C rs189139528 + CDS Nonsynonymous[Arg41Thr]
443 .. 443 G/A/C/T rs9262618 + CDS
472 .. 472 G/C rs9262619 + CDS Nonsynonymous[Ala54Pro]
480 .. 480 C/T rs3915966 - CDS Synonymous[Pro56Pro]
493 .. 493 G/A rs150117673 + CDS Nonsynonymous[Gly61Arg]
509 .. 509 G/A rs147731380 + CDS Nonsynonymous[Ser66Asn]
626 .. 626 C/T rs9501041 + CDS Nonsynonymous[Thr105Ile]
667 .. 667 G/A rs200550924 - CDS Nonsynonymous[Asp119Asn]
680 .. 680 T/C rs117227928 + CDS Nonsynonymous[Val123Ala]
735 .. 735 C/G rs11758693 + CDS Nonsynonymous[Asp141Glu]
749 .. 749 A/G rs140895602 + CDS Nonsynonymous[Asp146Gly]
861 .. 861 A/T rs2106068 - CDS Synonymous[Thr183Thr]
864 .. 864 G/A rs183189724 + CDS Synonymous[Glu184Glu]
865 .. 865 G/A rs5018622 + CDS Nonsynonymous[Asp185Asn]
869 .. 869 C/T rs5018621 + CDS Nonsynonymous[Ser186Phe]
870 .. 870 C/T rs5018620 + CDS Synonymous[Ser186Ser]
883 .. 883 C/G rs147946947 + CDS Nonsynonymous[Pro191Ala]
886 .. 886 G/A rs9262630 + CDS Nonsynonymous[Gly192Arg]
952 .. 952 G/A rs112827405 + CDS Nonsynonymous[Gly214Arg]
970 .. 970 A/G rs11754026 + CDS Nonsynonymous[Ile220Val]
977 .. 977 C/T rs112735708 + CDS Nonsynonymous[Ala222Val]
993 .. 993 C/T rs62401700 + CDS Synonymous[Thr227Thr]
1002 .. 1002 C/T rs111667051 + CDS Synonymous[Ser230Ser]
1102 .. 1102 C/A rs9262631 + 3'UTR
1174 .. 1174 T/C rs3764808 - 3'UTR
1321 .. 1321 T/C rs191134924 + 3'UTR
1340 .. 1340 A/T/G/C rs2517521 - 3'UTR
1341 .. 1341 C/A rs7741474 + 3'UTR
1376 .. 1376 G/A rs146444182 + 3'UTR
1397 .. 1397 A/C rs2523845 - 3'UTR
1423 .. 1423 C/T rs118076323 + 3'UTR
1495 .. 1495 C/G rs141033379 + 3'UTR
1512 .. 1512 G/A rs2428515 - 3'UTR
1514 .. 1514 A/G rs7745521 + 3'UTR
1520 .. 1520 G/A rs2428514 - 3'UTR
1567 .. 1567 A/T rs144728613 + 3'UTR
1573 .. 1573 G/A rs78725346 + 3'UTR
1658 .. 1658 A/-/AA rs9278855 + 3'UTR
1658 ^ 1659 -/A rs11410910 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer