H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000563781_03 Accession number: AB560771 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Protein PBMUCL2; HLA complex group 22; Panbronchiolitis-related mucin-like protein 2; Precursor;
 
 

Transcript original information
Accession number AB560771.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1671[bp] (No. of exon:4)[A:453 T:343 G:402 C:473]
Devision NA
Molecular type NA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1658(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) TAGTAG; 
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0166084
Genomic location  G-integra Help Chromosome 6_cox_hap2
Location NA
Position 2535933- 2542361
Strand +
Possible duplicated location(s) HIX0207400;  HIX0165913;  HIX0166350;  HIX0166804;  HIX0167048;  HIX0167336;  HIX0167592; 
Gene structure 4 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:285834
KEGG GENES KEGG GENES(285834)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000381820
Predicted CDS 313..1068;  251[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.784
Database links RefSeq NA
UniProt E2RYF7
CCDS NA

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000563781_03
H-Inv cluster ID Locus viewHIX0166084
Accession number AB560771.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Protein PBMUCL2; HLA complex group 22; Panbronchiolitis-related mucin-like protein 2; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (E2RYF7)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 1457440420981447ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ PBMUCL2
UniProt HCG22
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000381820
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:285834
KEGG GENES KEGG GENES(285834)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  mitochondria;  peroxisome; 
Target P signal peptide
SOSUI soluble protein
TMHMM soluble protein
PTS1
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.