main >

Motif Distribution Viewer (MDV) is a web tool for visualizing the distribution of various motifs around transcription start sites (TSS) on a user-defined set of promoter sequences. The tool can be used on the original site, as well as downloaded to analyze locally.

1. Select gene set

Paste Gene IDs (optional)

2. Set parameters (optional)

Search range (bp) [, ] Step

2D profile (B,D)
Histogram (A,C)

Height: pixels/motif
Height: pixels

Width: pixels

3. Select a motif-view (A, B, C, or D)

Matrix type: Position Weight Matrix (PWM) / Position-specific scoring matrix (PSSM) from JASPARdatabase

A: PWM-Histogram

B: PWM-2D profile	ABI4 AGL3 ARR10 ATHB5 Agamous Ar Arnt Arnt-Ahr Athb-1 Bapx1 Broad-complex_1 Broad-complex_2 Broad-complex_3 Broad-complex_4 CF2-II CFI-USP CREB1 Chop-cEBP Dof2 Dof3 Dorsal_1 Dorsal_2 E2F1 E74A ELK1 ELK4 ESR1 En1 Evi1 FOXC1 FOXD1 FOXF2 FOXI1 FOXL1 Fos Foxa2 Foxd3 Foxq1 GABPA GAMYB GATA2 GATA3 Gata1 Gfi HAND1-TCF3 HLF HMG-1 HMG-IY HNF4 Hox11-CTF1 Hunchback ID1 IRF1 IRF2 Klf4 MAX MEF2A MNB1A MYB.ph3 MYC-MAX Macho-1 MafB Myb Mycn Myf NF-Y NF-kappaB NFIL3 NFKB1 NHLH1 NR1H2-RXR NR2F1 NR3C1 Nkx2-5 PBF PPARG PPARG-RXRA Pax2 Pax4 Pax5 Pax6 Pbx Prrx2 REL RELA RORA RORA1 RREB1 RUNX1 RUSH1-alfa RXR-VDR Roaz SOX9 SP1 SPI1 SPIB SQUA SRF SRY SU_h Snail Sox17 Sox5 Spz1 Staf T TAL1-TCF3 TBP TCF1 TCF11-MafG TEAD TFAP2A TP53 USF1 Ubx YY1 ZNF42_1-4 ZNF42_5-13 bZIP910 bZIP911 c-ETS cEBP deltaEF1	Plus strand Minus strand

Text pattern type: IUB code

C: IUB-Histogram		- The excluded patterns need '-'. - Up to 125 patterns. - Delimited by spaces or tabs.

D: IUB-2Dprofile	TATAWWR -TATATTG -TATATTA; SSANWSS -GGAGAGG -CCACACC; TCAKTY -tcattt; CCAAT; Plus strand Minus strand	- Up to 10 motifs. - Motifs should be separated by commas. - Line feed codes are ignored.